Introduction to Computational Proteomics

Additional Material: Problem Sets

Full Table of Content + Preface (pdf)

List of Chapters

1. What is Computational Proteomics?

2. Basic Notions in Molecular Biology

3. Sequence Comparison

4. Multiple Sequence Alignment, Profiles and Partial Order Graphs

5. Motif Discovery

6. Markov Models of Protein Families

7. Classifiers and Kernels

8. Protein Structure Analysis

9. Protein Domains

10. Clustering and Classification

11. Embedding Algorithms and Vectorial Representations

12. Analysis of Gene Expression Data

13. Protein-Protein Interactions

14. Cellular Pathways

15. Bayesian Belief Networks